geteenet: Generate exposures-exposures network

In yufree/enet: Network Analysis for Exposomics

Generate exposures-exposures network

Description

Generate exposures-exposures network

Usage

geteenet(expo, cutoff = 0.9, nacf = 0.2, e = NULL, name = NULL, ...)

Arguments

expo	exposures dataframe with row as exposures/peaks and column as samples
cutoff	correlation coefficient cutoff
nacf	NA cutoff for exposure, exposure with NA percentage larger than cutoff will be removed and others will be imputed by knn methods, default 0.2
e	value or vector, specific exposure or peak to its export network
name	export gml file for Cytoscape
...	other parameters for 'cor'

Value

list with index of exposures clusters, exposures clusters data and edge table

Examples

data(expo)
ee <- geteenet(expo)

yufree/enet documentation built on March 20, 2022, 11:59 p.m.