getgk: Gatekeeper discovery

In yufree/enet: Network Analysis for Exposomics

Gatekeeper discovery

Description

Gatekeeper discovery

Usage

getgk(meta, expo, cutoff = 0.9, multiple = FALSE, ...)

Arguments

meta	metabolites dataframe with row as metabolites/peaks and column as samples
expo	exposures dataframe with row as exposures/peaks and column as samples
cutoff	correlation coefficient cutoff for metabolites-metabolites network
multiple	logical, only output gatekeeper with multiple exposures
...	other parameters for 'cor'

Value

list with table of metabolites-exposures, metabolites-exposures network clusters data and edge table

Examples

data(expo)
data(meta)
gk <- getgk(exp(meta),expo)

yufree/enet documentation built on March 20, 2022, 11:59 p.m.