svabatch | R Documentation |
Plot the influences of DoE and Batch effects on each peaks
svabatch(df, dfsv, dfanova)
df |
data output from 'svacor' function |
dfsv |
data output from 'svaplot' function for corrected data |
dfanova |
data output from 'svaplot' function for raw data |
influences plot
svacor
, svaplot
, svapca
## Not run:
library(faahKO)
cdfpath <- system.file("cdf", package = "faahKO")
cdffiles <- list.files(cdfpath, recursive = TRUE, full.names = TRUE)
xset <- xcmsSet(cdffiles)
xset <- group(xset)
xset2 <- retcor(xset, family = "symmetric", plottype = "mdevden")
xset2 <- group(xset2, bw = 10)
xset3 <- fillPeaks(xset2)
df <- svacor(xset3)
dfsv <- svaplot(xset3)
dfanova <- svaplot(xset3, pqvalues = "anova")
svabatch(df,dfsv,dfanova)
## End(Not run)
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