pcasf: Compare matrices using PCA similarity factor

In yufree/pmd: Paired Mass Distance Analysis for GC/LC-MS Based Non-Targeted Analysis and Reactomics Analysis

Compare matrices using PCA similarity factor

Description

Compare matrices using PCA similarity factor

Usage

pcasf(x, y, dim = NULL)

Arguments

x	Matrix with sample in column and features in row
y	Matrix is compared to x.
dim	number of retained dimensions in the comparison. Defaults to all.

Value

Ratio of projected variance to total variance

Author(s)

Edgar Zanella Alvarenga

References

Singhal, A. and Seborg, D. E. (2005), Clustering multivariate time-series data. J. Chemometrics, 19: 427-438. doi: 10.1002/cem.945

Examples

c1 <- matrix(rnorm(16),nrow=4)
c2 <- matrix(rnorm(16),nrow=4)
pcasf(c1, c2)

yufree/pmd documentation built on June 14, 2025, 5:48 p.m.