| getcda | Perform correlation directed analysis for peaks list. |
| getchain | Get reaction chain for specific mass to charge ratio |
| getcluster | Get Pseudo-Spectrum as peaks cluster based on pmd analysis. |
| getcorcluster | Get Pseudo-Spectrum as peaks cluster based on correlation... |
| getms2pmd | read in MSP file as list for ms/ms annotation |
| getmspmd | read in MSP file as list for EI-MS annotation |
| getpaired | Filter ions/peaks based on retention time hierarchical... |
| getpmd | Get pmd for specific reaction |
| getpmddf | Get pmd details for specific reaction after the removal of... |
| getposneg | Link pos mode peak list with neg mode peak list by pmd. |
| getrda | Perform structure/reaction directed analysis for mass only. |
| getreact | Get quantitative paired peaks list for specific reaction/pmd |
| getsda | Perform structure/reaction directed analysis for peaks list. |
| getstd | Find the independent ions for each retention time... |
| gettarget | Get multiple injections index for selected retention time |
| globalstd | GlobalStd algorithm with structure/reaction directed analysis |
| hmdb | A dataframe containing HMDB with unique accurate mass pmd... |
| keggrall | A dataframe containing reaction related accurate mass pmd and... |
| MaConDa | mass spectrometry contaminants database for PMD check |
| omics | A dataframe containing multiple reaction database ID and... |
| pcasf | Compare matrices using PCA similarity factor |
| plotcn | plot PMD KEGG network for certain compounds and output... |
| plotpaired | Plot the mass pairs and high frequency mass distances |
| plotrtg | Plot the retention time group |
| plotsda | Plot the specific structure directed analysis(SDA) groups |
| plotstd | Plot the std mass from GlobalStd algorithm |
| plotstdrt | Plot the std mass from GlobalStd algorithm in certain... |
| plotstdsda | Plot the std mass from GlobalStd algorithm in structure... |
| pmdanno | Perform MS/MS pmd annotation for mgf file |
| runPMD | Shiny application for PMD analysis |
| runPMDnet | Shiny application for PMD network analysis |
| sda | A dataset containing common Paired mass distances of... |
| spmeinvivo | A peaks list dataset containing 9 samples from 3 fish with... |
