| data_calMean_calSD | Calculate mean and sd value by conditions |
| data_draw_specific | Draw Specific Protein Intensity plot |
| data_norm_ers | Normalize MS TMT data with ERS. |
| data_scale_mat | Dataset Scaled. |
| data_transform_melt | Transform DataFrame by melt |
| data_volcano | Draw volcano plot |
| data_volcano_label | Draw volcano plot with Labels |
| data_zero_substitution_3repeats | Zero Substitution in 3 Repeats. |
| MSDataSet-class | A Reference Class to represent MS dataset. |
| read_maxquant_prot | Read, clean and annotate MS TMT data. |
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