data_volcano_label: Draw volcano plot with Labels

In yuriychen/MSAnalysiscyl: MS analysis functions

Draw volcano plot with Labels

Description

Draw volcano plot with manual labels.

Usage

data_volcano_label(
  prot,
  condition1,
  condition2,
  df,
  xleft = -5,
  xright = 5,
  ydown = 0,
  ytop = 5,
  confidence = 0.95,
  s0 = 0.1,
  smooth_curve = TRUE,
  label = TRUE,
  label_list = "none"
)

Arguments

prot	A MSDataSet object.
condition1	A character of condition 1.
condition2	A character of condition 2.
df	A integer of freedom dgree.
xleft	A numeric for x-axis limit on left.
xright	A numeric for x-axis limit on right.
ydown	A numeric for x-axis limit on bottom.
ytop	A numeric for x-axis limit on top.
confidence	A numeric of confidence interval.
s0	A numeric of fudge factor s0.
smooth_curve	A boolean of significant curve or not.
label	A boolean of label or not.
label_list	A list of labels.

Details

Input dataframe from previous processing, then return a ggplot object of volcano plot.

Value

A list of dataframe and ggplot object.

yuriychen/MSAnalysiscyl documentation built on April 5, 2022, 4:28 a.m.