read_maxquant_prot: Read, clean and annotate MS TMT data.

In yuriychen/MSAnalysiscyl: MS analysis functions

Read, clean and annotate MS TMT data.

Description

Read, clean and annotate MS TMT data with Maxquant process data and meta file.

Usage

read_maxquant_prot(
  prot_raw,
  meta,
  name = "defalut",
  reference = FALSE,
  analysis_type = "TMT",
  exclusion_status = "none",
  normalization_status = c("none")
)

Arguments

prot_raw	A DataFrame of proteinGroups from MaxQuant.
meta	A DataFrame of metafile.
name	A character of the name.
reference	A boolean.
analysis_type	A character.
exclusion_status	A character.
normalization_status	A vector.

Details

Input MaxQuang processed MS TMT data and meta file, then return a MSDataSet object.

yuriychen/MSAnalysiscyl documentation built on April 5, 2022, 4:28 a.m.