data_SAME: data_SAME

In yycunc/SAMEclustering: SAME: Single-cell RNA-seq Aggregated clustering via Mixture model Ensemble for Single-cell RNA-seq Data

Description

An expression_matrix.csv (32738 genes and 500 cells of three cell types, cd56_NK cells, b cells and regulatory T cells from 10X Genomices (Zheng et al. 2016)), and celltype.info.csv (List of cell type and cluster information for the 500 cells).

Usage

data("data_SAME")

Format

An object of class list of length 4.

Source

data_SAME contains two datasets: one is from Zheng et al., (Nature Communications, 2016). Zheng dataset contains 500 human peripheral blood mononuclear cells (PBMCs) sequenced using GemCode platform, which consists of three cell types, CD56+ natural killer cells, CD19+ B cells and CD4+/CD25+ regulatory T cells. The original data can be downloaded from 10X GENOMICS website. The other is from Biase et al., (Genome Research, 2014). The Biase dataset has 49 mouse embryo cells, which were sequenced by SMART-Seq and can be found at NCBI GEO:GSE57249.

References

Ruth Huh, Yuchen Yang, Yun Li. SAME 2018

Examples

data(data_SAME)
## maybe str(data_SAME) ; plot(data_SAME) ...

yycunc/SAMEclustering documentation built on May 6, 2021, 6:05 p.m.