qsub: Submit jobs to qsub over ssh
In zachary-foster/qsubmitter:

Description Usage Arguments Examples

View source: R/submitter.R

This function submits commands to qsub (SGE) over ssh. It assumes password-less ssh keys are set up.

qsub(
  command,
  remote,
  parallel = FALSE,
  remote_cwd = NULL,
  runtime_folder = "qsub_records",
  wait = TRUE,
  cores = 1,
  queue = NULL,
  print_track = FALSE,
  print_info = TRUE,
  echo = TRUE,
  stdout = FALSE,
  stderr = FALSE,
  max_print = 10000
)

`command`	(`character`) One or more commands to run
`remote`	(`remote_server`) The remote server information.
`parallel`	(`logical` of length 1) If `TRUE`, run jobs in parallel. Default: `FALSE`
`remote_cwd`	(`character` of length 1) What to set the current working directory to on the remote server before running jobs. Default: The home directory on the remote server.
`runtime_folder`	(`character` of length 1) The location to save the runtime error, output, and qsub submission script. Default: A unique name with timestamp, random string, and first command in job.
`wait`	(`logical` of length 1) If `TRUE`, the function will wait for all jobs to complete before exiting. Default: TRUE
`cores`	(`numeric`) The number of cores to use. Default: 1
`queue`	(`numeric`) The name of the queue to use. Default: Use any available queue.
`print_track`	(`logical` of length 1) If `TRUE`, the progress of the jobs is periodically printed. Default: TRUE
`print_info`	(`logical` of length 1) If `TRUE`, information on the job is printed Default: TRUE
`echo`	(`logical` of length 1) If `TRUE`, the command to be executed is printed Default: TRUE
`stdout`	(`logical` or `character` of length 1) If `TRUE`, print or save the standard output of the job.
`stderr`	(`logical` or `character` of length 1) If `TRUE`, print or save the standard error of the job.
`max_print`	(`numeric`) The maximum number of characters to print each time something is printed.

## Not run: 

remote <- remote_server$new(server = "shell.somewhere.edu", user = "joeshmo", port = 345)
qsub(c('echo "test 1" > test1.txt', 'echo "test 2" > test2.txt'), remote, runtime_folder = "~/test/out")

## End(Not run)