acidity_landscape: Acidity Landscape

In zalperst/visualizeprot: Visualize the Protein Chemical Property Landscape

Description

Create a depcition of the surface showing by color which coordinates are either basic, acidic, or neutral. You have the option of passing more arguments to a facet_wrap() call in th function.

Usage

acidity_landscape(mypdb, ...)

Arguments

mypdb	This is an object given processed by pdb_dataframe(). Additionally one can add their own acidity categories as long as the column name is still "Acidity"
...	This passes parameters to a facet_wrap() call from ggplot

Value

This function returns a one dimensional color based plot of the acidity category (i.e. acidic, neutral, or basic)

Examples

library(Rpdb)
library(tidyverse)
library(dplyr)
library(ggplot2)

y <- pdb_dataframe(CYP)
z <- assign_params(y)
acidity_landscape(z)

zalperst/visualizeprot documentation built on May 4, 2019, 9:08 p.m.