pdb_dataframe: This function is neccesary to process the pdb file pre...

In zalperst/visualizeprot: Visualize the Protein Chemical Property Landscape

Description

This function is neccesary to process the pdb file pre processed by Rpdb from the .pdb file into a data frame containing the xyz coordinates. To use the package functions this is a necesary pre-processing step of the Rpdb object. You may add more options to the function passed onto a as.tibble call for processing the Rpdb object.

Usage

pdb_dataframe(mypdb, ...)

Arguments

mypdb	This is an object given by an Rpdb processed .pdb file
...	Parameters passed onto an as_tibble() call

Value

Retuns a coordinate based dataframe (tibble) of the pdb file Comments, and connectivity information is lost

Examples

library(Rpdb)
library(tidyverse)
library(dplyr)

y <- pdb_dataframe(CYP)

zalperst/visualizeprot documentation built on May 4, 2019, 9:08 p.m.