kobePhaseMar-method: Kobe Phase Plot with Marginal Densities

In zanbi/https-github.com-marchtaylor-fishdynr-FISHDYNR: Tools for Scientific Fisheries Management Advice

Description

Plots a Kobe Phase Plot with marginal densities '

Usage

kobePhaseMar(pts, trks = NULL, mns = FALSE, size = 1,
  xlab = expression(B:B[MSY]), ylab = expression(F:F[MSY]), xlim = 2,
  ylim = xlim, quadcol = c("red", "green", "yellow", "yellow"),
  col = colorRampPalette(c("orange", "blue"), space = "Lab"),
  shade = 0.5, col2 = grey(shade), col3 = grey(shade * 1.1),
  layer = NULL, bref = 1, fref = 1)

Arguments

pts	data.frame with stock and harvest variables respresenting points for a year
trks	data.frame with stock and harvest variables respresenting tracks, NULL by default
mns	logical, do you want mean by year of pts be plotted, FALSE by default
size	of points1 by default
xlab	character or expression for x axis title, expression(B:B[MSY]) by default
ylab	character or expression for x axis title, expression(F:F[MSY]) by default
xlim	upper limit of x axis, 2 by default
ylim	upper limit of x axis, 2 by default
quadcol	colours for the quadrants
col	colorRampPalette(c("orange","blue"),space="Lab") by default
shade	.5 by default
col2	grey(shade) by default
col3	grey(shade*1.1) by default
layer	a ggplot2 layer to add to phase plot
bref	vertical seperation between quadants and reference line for marginal densities
fref	horizontal seperation between quadants and reference line for marginal densities

Value

a list with 3 ggplot objects, the 2 marginal densities and the phase plot

Examples

   ## Not run: rnorm(10)

zanbi/https-github.com-marchtaylor-fishdynr-FISHDYNR documentation built on March 7, 2020, 12:50 a.m.