TaxaToDF_fn: Workflow Hub for Automated Metagenomic Exploration (WHAM!)
In zc1286/Wham: Workflow Hub for Automated Metagenomic Exploration (WHAM!)
Description
Usage
Arguments
Value
Examples
Description
converting taxa character to data frame. Missing taxa are filled with 'unassiagned'
Usage
1
TaxaToDF_fn(taxainfo, level_table = c("not_otu", "otu"))
Arguments
taxainfo
a vector store taxonomic information
level_table
decide to use 16s or shotgun sequencing
Value
return a data frame contain taxonomic information
Examples
1
2
3
4
taxainfo = c("Unclassified",
"k__Archaea;p__Euryarchaeota;c__Methanobacteria;o__Methanobacteriales",
"k__Archaea;p__Euryarchaeota;c__Methanobacteria;o__Methanobacteriales;f__Methanobacteriaceae")
TaxaToDF_fn(taxainfo)
zc1286/Wham documentation built on May 14, 2021, 8 p.m.
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Description Usage Arguments Value Examples
Description
converting taxa character to data frame. Missing taxa are filled with 'unassiagned'
Usage
1 | TaxaToDF_fn(taxainfo, level_table = c("not_otu", "otu"))
|
Arguments
taxainfo |
a vector store taxonomic information |
level_table |
decide to use 16s or shotgun sequencing |
Value
return a data frame contain taxonomic information
Examples
1 2 3 4 | taxainfo = c("Unclassified",
"k__Archaea;p__Euryarchaeota;c__Methanobacteria;o__Methanobacteriales",
"k__Archaea;p__Euryarchaeota;c__Methanobacteria;o__Methanobacteriales;f__Methanobacteriaceae")
TaxaToDF_fn(taxainfo)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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