VolcanoPlot: VolcanoPlot

In zc1286/Wham: Workflow Hub for Automated Metagenomic Exploration (WHAM!)

Description

Visualization of Wham upstream analysis

Usage

VolcanoPlot(
  object = NULL,
  effect = c("effect"),
  p_value = c("we.eBH", "we.ep", "wi.eBH", "wi.ep"),
  pCutoff = 0.05,
  effectCutoff = 1,
  ...
)

Arguments

object	required. The output of WhamBiobakery, WhamEBI or Wham16s
effect	c("effect"), Use effect as effectcutoff. Default is "effect"
p_value	c("we.eBH","we.ep","wi.eBH","wi.ep"). Using one of them as p-value.Default is "we.eBH".
pCutoff	Cut-off for statistical significance. A horizontal line will be drawn at -log10(pCutoff). DEFAULT = 0.05. OPTIONAL
effectCutoff	ut-off for absolute effect size. Vertical lines will be drawn at the negative and positive values of FCCutoff. DEFAULT = 1.0. OPTIONAL.
...	...

Value

a volcano plot of statistical result

Examples

# see the vignette for more details

zc1286/Wham documentation built on May 14, 2021, 8 p.m.