synth_comm_from_counts: from count data (ex HMP) fit parameters to OTU margins and...

In zdk123/codmeR: COmpositional Data analysis tools for Microbial Ecology in R

Description

from count data (ex HMP) fit parameters to OTU margins and simulate a new community with those properties

Usage

synth_comm_from_counts(comm, distr, Sigma = cov(t(comm)), params,
  n = ncol(comm), retParams = FALSE, ...)

Arguments

comm	community: matrix of counts
distr	distribution to fit (see fitdistr)
Sigma	covariance structure (defaults to empirical cov of comm)
params	optionally supply already fitted parameters
n	number of samples (defaults to comm samples)
retParams	if TRUE, return the fitted parameters
...	additional parameters to parameter fitting

Value

community

zdk123/codmeR documentation built on May 4, 2019, 10:14 p.m.