zdk123/codmeR
COmpositional Data analysis tools for Microbial Ecology in R

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146
Source code
11
Man pages
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zdk123/codmeR: COmpositional Data analysis tools for Microbial Ecology in R
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API

API for zdk123/codmeR
COmpositional Data analysis tools for Microbial Ecology in R

Global functions
.fixInf Source code Source code
.negbin_getK Source code
.zinegbin_getK Source code Source code
.zinegbin_getLam Source code Source code
.zinegbin_getP Source code Source code
.zipois_getLam Source code Source code
.zipois_getP Source code Source code
CSS Source code
CSS.default Source code
CSS.matrix Source code
CSSstat Source code
DESeq Source code
DESeq.matrix Source code
Hamdist Man page Source code
HamdistMat Man page Source code
T Man page
addmin Source code
aitvar Source code
aitvar.data.frame Source code
aitvar.default Source code
aitvar.matrix Man page Source code
band Man page Source code
block Man page Source code
clr Source code
clr.data.frame Source code
clr.default Source code
clr.matrix Source code
cluster Man page Source code
coCalc Man page Source code
coCalcMat Source code
coabsence Source code
coabsence.default Source code
coabsence.matrix Source code
coabsenceMat Man page Source code
codmeR Man page
codmeR-package Man page
convert_MD_format Man page Source code
cooccur Man page
cooccurMat Man page Source code
cooccurance Source code
cooccurance.default Source code
cooccurance.matrix Source code
cor2cov Man page Source code Source code
cov2prec Man page Source code
covReport Source code
edge_count Source code
eigGraph Source code
erdos_renyi Man page Source code
fastaitvar Man page Source code
fitdistr Man page
fitfn_fixed Source code
fitfn_lnorm Source code
fixed_mean_vector Man page Source code
get_comm_params Man page Source code
graph2prec Man page Source code
graphReport Source code
hamming.dist Source code
hamming.dist.data.frame Source code
hamming.dist.default Source code
hamming.dist.matrix Source code
hub Man page Source code
logLiknb Source code
logLikzinb Source code
logLikzip Source code
log_norm_mean_vector Man page Source code
make_graph Man page Source code
make_precision_mat Man page Source code
multivnomial Source code
neff Man page Source code
norm_diric Source code
norm_pseudo Source code
norm_to_total Source code
prec2cov Man page Source code
proportionality_filter Man page Source code
pval Source code
pval.tavboot Source code
qqdplot Man page Source code
qqdplot_comm Man page Source code
rmvnegbin Man page Source code
rmvnorm Man page Source code Source code
rmvpois Man page Source code
rmvzinegbin Man page Source code Source code
rmvzipois Man page Source code Source code
rzipois Man page Source code Source code
scale_free Man page Source code
shannon Man page Source code
sim_counts Man page Source code
sparseSigma Man page
sparseSigma_JF Man page
sparse_iCov Man page
sparseiCov Man page Source code
synth_comm_from_counts Man page Source code
tavboot Source code
tril Source code
triu Source code
triu2diag Source code
unsparseSigma Man page Source code
zdk123/codmeR documentation built on May 4, 2019, 10:14 p.m.

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