Man pages for zexllin/lncRNAtools
Do lncRNA bioinformatics Advanced analysis,includes routine analysis of mRNA/miRNA
| ceRNAAnslysis | Competing endogenous RNAs (ceRNAs) analysis |
| Coexpression | Analysis of lncRNA co expression with mRNA |
| CombinePlot | Target prediction |
| DEAnalysis | Routine analysis of transcriptome sequencing |
| degene.report | write DeGene |
| DOEnrich | DO Enrichment |
| ExportNetwork | Export network for Cytoscape |
| GOEnrich | GO enrichment analysis |
| GOplots | Plots for enrichment analysis |
| HeatmapPlot | heatmap |
| KEGGEnrich | KEGG Enrichment |
| KEGGplots | Plots for enrichment analysis |
| LncRNAEnrich | co expression lncRNA enrichment analysis |
| mergeCorForNeargene | lncRNA cis |
| normPlot | Combination of box line diagram and density diagram |
| outline | Remove outliers |
| PCA_GGplot | PCA plot |
| plot_3dPCA | 3D PCA |
| plotcis | Plots for lncRNA cis analysis |
| rocplot | ROC curve |
| TFanalysis.Fisher | Correlation analysis of transcription factors |
| VolcanoPlot | volcano plot |
| writeDEdata | write difference analysis results to csv |
| WriteTargets | Target prediction |
