VolcanoPlot: volcano plot
In zexllin/lncRNAtools: Do lncRNA bioinformatics Advanced analysis,includes routine analysis of mRNA/miRNA
Description
Usage
Arguments
Author(s)
Description
A volcano plot showing differentially expressed genes/miRNAs
Usage
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VolcanoPlot(
deg.all,
fc = 2,
pval = 0.05,
data.type = "mRNA",
nlab = 0,
save = ""
)
Arguments
deg.all
a dataframe generated from DEAnalysis
containing all genes of analysis no matter they are differentially
expressed or not
fc
a numeric value specifying the threshold of fold change
pval
a nuemric value specifying the threshold of p value
default is 0.05
data.type
prefix for Save file names
nlab
a nuemric value,Specify the number of genes to display the gene name
save
Output file type,default is not save
Author(s)
zexl
zexllin/lncRNAtools documentation built on Jan. 1, 2021, 1:52 p.m.
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Description Usage Arguments Author(s)
Description
A volcano plot showing differentially expressed genes/miRNAs
Usage
1 2 3 4 5 6 7 8 | VolcanoPlot(
deg.all,
fc = 2,
pval = 0.05,
data.type = "mRNA",
nlab = 0,
save = ""
)
|
Arguments
deg.all |
a dataframe generated from |
fc |
a numeric value specifying the threshold of fold change |
pval |
a nuemric value specifying the threshold of p value default is 0.05 |
data.type |
prefix for Save file names |
nlab |
a nuemric value,Specify the number of genes to display the gene name |
save |
Output file type,default is not save |
Author(s)
zexl
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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