Description Usage Arguments Value Author(s) References See Also Examples
ssea.analyze.statistic
estimates the enrichment score based
on observed and expected ones.
1 | ssea.analyze.statistic(o, e)
|
o |
observed enrichment score |
e |
expected enrichment score |
score |
estimated enrichment score based on observed and expected scores |
Ville-Petteri Makinen
Shu L, Zhao Y, Kurt Z, Byars SG, Tukiainen T, Kettunen J, Orozco LD, Pellegrini M, Lusis AJ, Ripatti S, Zhang B, Inouye M, Makinen V-P, Yang X. Mergeomics: multidimensional data integration to identify pathogenic perturbations to biological systems. BMC genomics. 2016;17(1):874.
1 2 3 4 5 6 7 | ## O and E the observed and expected counts of positive findings
## (enrichment scores) at a given cutoff:
set.seed(1)
o <- rnorm(1)
e <- rnorm(1)
## find the final enrichment score from the observed and estimated scores:
z <- ssea.analyze.statistic(o, e)
|
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