integrateMethod: Integrate method for identifying miRNA sponge interactions by...

In zhangjunpeng411/miRspongeR: Identification and analysis of miRNA sponge regulation

Integrate method for identifying miRNA sponge interactions by integrating different methods

Description

Integrate method for identifying miRNA sponge interactions by integrating different methods.

Usage

integrateMethod(Interlist, Intersect_num)

Arguments

Interlist	List object, a list of miRNA sponge interactions from different methods.
Intersect_num	The least number of different methods intersected for integration. The value of 1 means the union of miRNA sponge interactions from different methods.

Value

A list of integrated miRNA sponge interactions.

Author(s)

Junpeng Zhang (https://www.researchgate.net/profile/Junpeng_Zhang3)

Examples

# Obtain expression data file "ExpData.csv" in csv format
ExpDatacsv <- system.file("extdata","ExpData.csv",package="miRspongeR")
ExpData <- read.csv(ExpDatacsv, header=TRUE, sep=",")

# Obtain miRNA-target interaction data file "miR2Target.csv" in csv format
miR2Target <- system.file("extdata", "miR2Target.csv", package="miRspongeR")
miRTarget <- read.csv(miR2Target, header=TRUE, sep=",")
miRHomologyceRInt <- spongeMethod(miRTarget, method = "miRHomology")
pcceRInt <- spongeMethod(miRTarget, ExpData, method = "pc")
sppcceRInt <- spongeMethod(miRTarget, ExpData, method = "sppc")
Interlist <- list(miRHomologyceRInt[, 1:2], pcceRInt[, 1:2], sppcceRInt[, 1:2])
IntegrateceRInt <- integrateMethod(Interlist, 2)

zhangjunpeng411/miRspongeR documentation built on Aug. 26, 2024, 6:48 a.m.