Man pages for zhengfj1994/MeTEA
Targeted extraction from untargeted metabolomics dataset by using metabolomics database
| annotationFromPeakTable | Title annotationFromPeakTable |
| annotationFromPeakTable.parallel | Title |
| batchMS2Score | Title batchMS2Score |
| batchMS2Score.parallel | Title batchMS2Score.parallel |
| batchMS2Score.QQQ | Title batchMS2Score.QQQ |
| dbImporter | Title Import metabolomics database which saved in xlsx file... |
| deconvolve_fff | Deconvolve incompletely resolved peaks |
| emgGaussian_guess | Guess function for initial exponentially modified gaussian... |
| emgGaussian_minpack.lm | Implementation of the Exponentially Modified Gaussian (EMG)... |
| emgGaussian_minpack.lm_objectiveFun | Exponentially Modified Gaussian minpack.lm objective function |
| entropyCalculator | Title Use EIC data to calculate entropy and the position... |
| exactMsp | Title exactMsp |
| extracResFilter | Title Fliter the result of targetExtraction by entropy and... |
| fitCurve | Curve fitting using minpack.lm |
| gaussian_cerf | Gaussian Error function |
| gaussian_erf | Gaussian Error function |
| identifiedResFilter | Title Filter identified Result |
| importMgf | Title Import mgf files and generate mgfData (raw file) and... |
| intEntropyCalculator | Title Calculate entropy |
| is.peakPantheR_curveFit | Check if object is of class peakPantheR_curveFit |
| jsonReader | Title Convert json file to csv file. |
| KEGGdownloader | Title Download compounds in KEGG. |
| list2dataframe | Title Tranfer list to dataframe. |
| mergems2 | Title merge MSMS |
| MetExAnnotation | Title Annotate metabolites by MetEx in one line. |
| ms1ms2Match | Title When mz and rt are given, find the matched MSMS. |
| ms2Score | Title Give MSMS Score. |
| ms2Score.old | Title Give MSMS Score. |
| peakDectAndEntroCal | Title Use EIC data to do peak detection and calculate entropy... |
| peakDetection | Title Use function in python to do peak detection. |
| peakGroup | Title Peak Group |
| predictCurve | Predict curve values |
| readMsp | Title This function is come form R package named "metaMS".... |
| retentionTimeCalibration | Title Use internal standard retention to cailbrate retention... |
| skewedGaussian_guess | Guess function for initial skewed gaussian parameters and... |
| skewedGaussian_minpack.lm | Implementation of the Skewed Gaussian peak shape for use with... |
| skewedGaussian_minpack.lm_objectiveFun | Skewed Gaussian minpack.lm objective function |
| targetExtraction | Title Targeted extraction from untargeted metabolomics data... |
| targetExtraction.parallel | Title Targeted extraction from untargeted metabolomics data... |
| xmlReader | Title Convert json file to csv file. |
