retentionTimeCalibration: Title Use internal standard retention to cailbrate retention...
In zhengfj1994/MeTEA: Targeted extraction from untargeted metabolomics dataset by using metabolomics database
Description
Usage
Arguments
Value
References
Examples
View source: R/retentionTimeCalibration.R
Description
Title
Use internal standard retention to cailbrate retention time of metabolites in database.
Usage
1
retentionTimeCalibration(is.tR.file, database.df)
Arguments
is.tR.file,
the txt file of IS retention times in database and experimental.
database.df,
the imported database dataframe.
Value
calibrated.RT.db
References
Huan, T. et al. DnsID in MyCompoundID for rapid identification of dansylated amine- and phenol-containing metabolites in LC-MS-based metabolomics. Anal. Chem. 87, 9838-9845 (2015).
Examples
1
2
3
4
5
load(system.file("extdata/testData", "dbDataTest.rda", package = "MetEx"))
calibrated.RT.db <- retentionTimeCalibration(is.tR.file =
system.file("extdata/trCalibration",
"IS-for-tR-calibration.xlsx", package = "MetEx"),
database.df = dbDataTest)
zhengfj1994/MeTEA documentation built on June 29, 2021, 5:21 a.m.
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Description Usage Arguments Value References Examples
View source: R/retentionTimeCalibration.R
Description
Title Use internal standard retention to cailbrate retention time of metabolites in database.
Usage
1 | retentionTimeCalibration(is.tR.file, database.df)
|
Arguments
is.tR.file, |
the txt file of IS retention times in database and experimental. |
database.df, |
the imported database dataframe. |
Value
calibrated.RT.db
References
Huan, T. et al. DnsID in MyCompoundID for rapid identification of dansylated amine- and phenol-containing metabolites in LC-MS-based metabolomics. Anal. Chem. 87, 9838-9845 (2015).
Examples
1 2 3 4 5 | load(system.file("extdata/testData", "dbDataTest.rda", package = "MetEx"))
calibrated.RT.db <- retentionTimeCalibration(is.tR.file =
system.file("extdata/trCalibration",
"IS-for-tR-calibration.xlsx", package = "MetEx"),
database.df = dbDataTest)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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