Files in zhengxwen/SNPRelate
Parallel Computing Toolset for Relatedness and Principal Component Analysis of SNP Data
.Rbuildignore
.gitattributes
.github/workflows/r.yml
.gitignore
DESCRIPTION
NAMESPACE
NEWS
R/AllUtilities.R
R/Conversion.R
R/Conversion2.R
R/IBD.R
R/IBS.R
R/Internal.R
R/LD.R
R/PCA.R
README.md
data/hapmap_geno.RData
inst/CITATION
inst/extdata/hapmap_geno.gds
inst/extdata/plinkhapmap.bed.gz
inst/extdata/plinkhapmap.bim.gz
inst/extdata/plinkhapmap.fam.gz
inst/extdata/sequence.vcf
inst/unitTests/test_Func.R
inst/unitTests/test_GRM.R
inst/unitTests/test_LD.R
inst/unitTests/test_Transpose.R
inst/unitTests/test_examples.R
inst/unitTests/test_rel.R
inst/unitTests/valid/Validate.Beta.RData
inst/unitTests/valid/Validate.EIGMIX.RData
inst/unitTests/valid/Validate.IBS.RData
inst/unitTests/valid/Validate.KING.RData
inst/unitTests/valid/Validate.MoM.RData
inst/unitTests/valid/Validate.PCA.RData
man/SNPGDSFileClass-class.Rd
man/SNPRelate-package.Rd
man/hapmap_geno.Rd
man/snpgdsAdmixPlot.Rd
man/snpgdsAdmixProp.Rd
man/snpgdsAlleleSwitch.Rd
man/snpgdsApartSelection.Rd
man/snpgdsBED2GDS.Rd
man/snpgdsClose.Rd
man/snpgdsCombineGeno.Rd
man/snpgdsCreateGeno.Rd
man/snpgdsCreateGenoSet.Rd
man/snpgdsCutTree.Rd
man/snpgdsDiss.Rd
man/snpgdsDrawTree.Rd
man/snpgdsEIGMIX.Rd
man/snpgdsErrMsg.Rd
man/snpgdsExampleFileName.Rd
man/snpgdsFst.Rd
man/snpgdsGDS2BED.Rd
man/snpgdsGDS2Eigen.Rd
man/snpgdsGDS2PED.Rd
man/snpgdsGEN2GDS.Rd
man/snpgdsGRM.Rd
man/snpgdsGetGeno.Rd
man/snpgdsHCluster.Rd
man/snpgdsHWE.Rd
man/snpgdsIBDKING.Rd
man/snpgdsIBDMLE.Rd
man/snpgdsIBDMLELogLik.Rd
man/snpgdsIBDMoM.Rd
man/snpgdsIBDSelection.Rd
man/snpgdsIBS.Rd
man/snpgdsIBSNum.Rd
man/snpgdsIndInb.Rd
man/snpgdsIndInbCoef.Rd
man/snpgdsIndivBeta.Rd
man/snpgdsLDMat.Rd
man/snpgdsLDpair.Rd
man/snpgdsLDpruning.Rd
man/snpgdsMergeGRM.Rd
man/snpgdsOpen.Rd
man/snpgdsOption.Rd
man/snpgdsPCA.Rd
man/snpgdsPCACorr.Rd
man/snpgdsPCASNPLoading.Rd
man/snpgdsPCASampLoading.Rd
man/snpgdsPED2GDS.Rd
man/snpgdsPairIBD.Rd
man/snpgdsPairIBDMLELogLik.Rd
man/snpgdsPairScore.Rd
man/snpgdsSNPList.Rd
man/snpgdsSNPListClass.Rd
man/snpgdsSNPListIntersect.Rd
man/snpgdsSNPRateFreq.Rd
man/snpgdsSampMissRate.Rd
man/snpgdsSelectSNP.Rd
man/snpgdsSlidingWindow.Rd
man/snpgdsSummary.Rd
man/snpgdsTranspose.Rd
man/snpgdsVCF2GDS.Rd
man/snpgdsVCF2GDS_R.Rd
src/ConvToGDS.cpp
src/Makevars
src/Makevars.win
src/R_SNPRelate.c
src/SNPRelate.cpp
src/ThreadPool.cpp
src/ThreadPool.h
src/dGenGWAS.cpp
src/dGenGWAS.h
src/dVect.cpp
src/dVect.h
src/genBeta.cpp
src/genEIGMIX.cpp
src/genFst.cpp
src/genHWE.cpp
src/genIBD.cpp
src/genIBS.cpp
src/genKING.cpp
src/genLD.cpp
src/genPCA.cpp
src/genPCA.h
src/genSlideWin.cpp
tests/runTests.R
vignettes/SNPRelate.Rmd
vignettes/flowchart.svg
