bin_gel | Force multiple gels to share identical bins |
build_data_for_dewarping | Create data for Bayesian 2D dewarping |
compute_local_relative_score | Compute local relative scores: |
compute_score_mat_peak | Get the bins for bands: |
correct_batch_effect_by_ref | Piecewise-linear warping to correct batch effects |
create_batch_aligned_data | Create the binned data after piecewise linear warping |
crop_end | remove the right end of the gel image |
dewarp2d | Fit Bayesian 2D image dewarping models |
edges | Get the two-sided end points |
image_gel | Make grayscale heatmap for one gel |
make_list | Takes any number of R objects as arguments and returns a list... |
myARI | Compare two partitions (could be of different lengths) |
pair2id | This function convert ids: (will need to move to the spotgear... |
plot_lane | Plot intensity of lanes (for raw data prior to cropping) |
pwl | Piecewise linear warping function for one index in the... |
pwl_after_dewarping | Piecewise linear warping after aligning the landmarks |
read_dewarp_folder | Read data and other model information from a folder that... |
read_IPdata | Read Immuno-Precipitation (IP) data |
sign_score | Calculate relative scores for peak calling |
smooth_gel | Initial smoothing using the obtained raw intensities for all... |
spotgear | spotgear: *S*ubset *P*rofiling and *O*rganizing *T*ools for... |
spotgear_identifyMajorPeaks | Identify peaks based on the ridges in 2-D CWT coefficient... |
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