Man pages for zhenkewu/spotgear
Subset Profiling and Organizing Tools for Gel Electrophoresis Autoradiography in R
| bin_gel | Force multiple gels to share identical bins |
| build_data_for_dewarping | Create data for Bayesian 2D dewarping |
| compute_local_relative_score | Compute local relative scores: |
| compute_score_mat_peak | Get the bins for bands: |
| correct_batch_effect_by_ref | Piecewise-linear warping to correct batch effects |
| create_batch_aligned_data | Create the binned data after piecewise linear warping |
| crop_end | remove the right end of the gel image |
| dewarp2d | Fit Bayesian 2D image dewarping models |
| edges | Get the two-sided end points |
| image_gel | Make grayscale heatmap for one gel |
| make_list | Takes any number of R objects as arguments and returns a list... |
| myARI | Compare two partitions (could be of different lengths) |
| pair2id | This function convert ids: (will need to move to the spotgear... |
| plot_lane | Plot intensity of lanes (for raw data prior to cropping) |
| pwl | Piecewise linear warping function for one index in the... |
| pwl_after_dewarping | Piecewise linear warping after aligning the landmarks |
| read_dewarp_folder | Read data and other model information from a folder that... |
| read_IPdata | Read Immuno-Precipitation (IP) data |
| sign_score | Calculate relative scores for peak calling |
| smooth_gel | Initial smoothing using the obtained raw intensities for all... |
| spotgear | spotgear: *S*ubset *P*rofiling and *O*rganizing *T*ools for... |
| spotgear_identifyMajorPeaks | Identify peaks based on the ridges in 2-D CWT coefficient... |
