Description Usage Arguments Value
Construct data frame that store all detected bands (NB: the result can be trimmed to exclude specific rows.)
1 | build_data_for_dewarping(score_mat_list, analysis_id, rf_grid, N_g_vec)
|
score_mat_list |
A list of matrices. Each matrxi has B rows and N_g columns. NA means non-peaks, a number, usually 3, represents peaks. |
analysis_id |
choose the gels in this analysis; user's choice. |
rf_grid |
A vector of length B (=670) equal-spaced grid from 0 to 1. |
N_g_vec |
A named numeric vector showing the number of lanes (incl. Lane 1s) for each gel with the name being the original ID before being subset by analysis_id. |
A data frame comprised of 5 elements:
gel_ID
lane_ID
band_ID
Y
Location on Gel for the peaks
peak_bin_index
The bin index for the peaks
lane_ID_stacked
cumulative counts.
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