Files in zhilongjia/cogena
co-expressed gene-set enrichment analysis
.Rbuildignore
.github/workflows/r.yml
DESCRIPTION
NAMESPACE
R/Class_methods.R
R/PEI.R
R/clEnrich.R
R/clEnrich_one.R
R/coExp.R
R/cogena.R
R/cogena_class.R
R/corInCluster.R
R/dist_class.R
R/enrichment.R
R/gene2set.R
R/geneExpInCluster.R
R/geneInCluster.R
R/genecl_class.R
R/gmt2list.R
R/gmtlist2file.R
R/heatmap.3.R
R/heatmapCluster.R
R/heatmapCmap.R
R/heatmapPEI.R
R/pClusters.R
R/sota.R
R/upDownGene.R
README.Rmd
README.md
cogena.Rproj
data/AllGeneSymbols.RData
data/Psoriasis.RData
data/datalist
inst/NEWS.Rd
inst/extdata/CmapDn100.gmt.xz
inst/extdata/CmapUp100.gmt.xz
inst/extdata/README
inst/extdata/c2.cp.kegg.v5.0.symbols.gmt.xz
inst/extdata/c2.cp.kegg.v7.01.symbols.gmt.xz
inst/extdata/c5.bp.v7.01.symbols.gmt.xz
inst/figure/Cogena_workflow.png
man/AllGeneSymbols.Rd
man/DEexprs.Rd
man/PEI.Rd
man/Psoriasis.Rd
man/clEnrich.Rd
man/clEnrich_one.Rd
man/clusterMethods.Rd
man/coExp.Rd
man/cogena_class.Rd
man/cogena_package.Rd
man/corInCluster.Rd
man/enrichment.Rd
man/gene2set.Rd
man/geneExpInCluster.Rd
man/geneInCluster.Rd
man/genecl_class.Rd
man/geneclusters.Rd
man/gmt2list.Rd
man/gmtlist2file.Rd
man/heatmap.3.Rd
man/heatmapCluster.Rd
man/heatmapCmap.Rd
man/heatmapPEI.Rd
man/mat.Rd
man/nClusters.Rd
man/pClusters.Rd
man/sampleLabel.Rd
man/show.Rd
man/sota.Rd
man/summary.Rd
man/upDownGene.Rd
vignettes/Cogena_workflow.png
vignettes/cogena-vignette_html.Rmd
vignettes/cogena-vignette_pdf.Rmd
vignettes/custom.css
