plot_boxplot: make a boxplot

In zhuchcn/HTSet: High through-put experiment dataset container

Description

Plotting a boxplot of a specified feature

Usage

plot_boxplot(
  object,
  feature,
  x,
  rows = NULL,
  cols = NULL,
  line_by = NULL,
  fill_by = NULL,
  color_by = NULL,
  points = FALSE,
  point_color = "black",
  line_color = "black",
  box_width = 0.75,
  whiskers = TRUE,
  whisker_width = 0.2
)

Arguments

object	HTSet-class
feature	character. The feature to use as y axis.
x	character. The sample variable to be used as x axis.
rows	character. The sample variable to split horizontally.
cols	character. The sample variable to split vertically.
line_by	characte. The sample variable to draw lines.
fill_by	character. The sample variable to fill colors to boxes.
color_by	character. The sample variable to color points and/or points.
points	boolean. Whether to draw points on top of boxes.
point_color	character. The points color. Ignored if color_by is specified.
line_color	character. The lines color. Ignored if color_by is specified.
box_width	numeric. The box width. Default: 0.75
whiskers	boolean. Whether to draw wiskers.
whisker_width	numeric. The width of wiskers.

Value

ggplot

Author(s)

Chenghao Zhu

zhuchcn/HTSet documentation built on April 10, 2020, 4:51 p.m.