volcanoplot.ModelFit: volcano plot

In zhuchcn/HTSet: High through-put experiment dataset container

Description

Creates a volcano plot for the returned result of model_fit

Usage

## S3 method for class 'ModelFit'
volcanoplot(
  fit,
  hline,
  color = "grey10",
  alpha = 0.75,
  hline_type = "dashed",
  hline_color = "grey30",
  hline_size = 0.5,
  hline_alpha = 0.75,
  ...
)

Arguments

fit	ModelFit. Must be returned by model_fit
hline	numeric. The p-value where the horizontal lines to draw. All values must between 0 and 1. If not given, serious lines will be drown at 0.05, 0.01, 0.001, 0.0001 ...
color	character for point color
alpha	numeric for point alpha
hline_type	character for hline type. Default is dashed
hline_color	chracter for hline color.
hline_size	numeric for hline size
hline_alpha	numeric for hline alpha
...	other args

Value

ggplot

Author(s)

Chenghao Zhu

zhuchcn/HTSet documentation built on April 10, 2020, 4:51 p.m.