Man pages for zhuchcn/phylox
Analyzing and Visualization Microbiome Data on Different Phylogenic Levels
| as_MicrobiomeSet | Convert a phyloseq object to a MicrobiomeSet object |
| as_MicrobiomeSetList | Convert a SummarizedPhyloseq object to a list of... |
| create_annodata | Construct annotation table for microbiomeViz cladogram... |
| data-fatigue | (Data) Chronic Fatigue Syndrome dataset |
| Extract | Extract or replace a slot of an SummarizedPhyloseq or... |
| fix_duplicate_tax | fix_duplicate_tax |
| phyloX-package | phylox |
| plot_bar | Stacked bar plot for SummarizedPhyloseq data |
| plot_boxplot | Boxplot for SummarizedPhyloseq data |
| plot_heatmap | Generate a heatmap with all the taxa the match a given... |
| spy_to_deseq2 | Conduct DESeq2 analysis on different phylogenic levels |
| spy_to_limma | Linear model using limma on different phylogenic levels |
| sub-subset-SummarizedPhyloseq-method | rdname Extract |
| SummarizedPhyloseq-accessors | Accessors for SummarizedPhyloseq class and... |
| SummarizedPhyloseq-assign | Assignment methods for SummarizedPhyloseq and... |
| SummarizedPhyloseq-class | S4 class SummarizedPhyloseq |
| SummarizedPhyloStats-class | S4 class SummarizedPhyloStats |
| summarizeFromPhyloseq | summarizeFromPhyloseq |
| summarize_taxa | summarize_taxa |
