phyloX-package: phylox
In zhuchcn/phylox: Analyzing and Visualization Microbiome Data on Different Phylogenic Levels
Description
This package allows you to store, handle, and analyz high-throughput p
hylogenic sequencing data in different phylogenic level. The the core
component of this package includes two S4 classes.
Details
The SummarizedPhyloseq was built based on the phyloseq class from the
phyloseq package. It inherits from the phyloseq class. Not only it contains
all the slots in phyloseq, but also it has 7 new slots as the summarized otu
table on the level of from species to kingdom. Differential abundance test
can then be applied to the SummarizedPhyloseq on each phyloseq level, and
the results are stored in the SummarizedPhyloStats class.
Author(s)
Chenghao Zhu [email protected]
zhuchcn/phylox documentation built on May 31, 2019, 5:14 p.m.
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Description
This package allows you to store, handle, and analyz high-throughput p hylogenic sequencing data in different phylogenic level. The the core component of this package includes two S4 classes.
Details
The SummarizedPhyloseq was built based on the phyloseq class from the phyloseq package. It inherits from the phyloseq class. Not only it contains all the slots in phyloseq, but also it has 7 new slots as the summarized otu table on the level of from species to kingdom. Differential abundance test can then be applied to the SummarizedPhyloseq on each phyloseq level, and the results are stored in the SummarizedPhyloStats class.
Author(s)
Chenghao Zhu [email protected]
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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