SummarizedPhyloseq-assign: Assignment methods for SummarizedPhyloseq and...

In zhuchcn/phylox: Analyzing and Visualization Microbiome Data on Different Phylogenic Levels

Description

Assignment methods for the SummarizedPhyloseq-class class and the SummarizedPhyloStats-class class

Usage

## S4 replacement method for signature 'SummarizedPhyloseq'
kingdom_table(object) <- value

## S4 replacement method for signature 'SummarizedPhyloseq'
phylum_table(object) <- value

## S4 replacement method for signature 'SummarizedPhyloseq'
class_table(object) <- value

## S4 replacement method for signature 'SummarizedPhyloseq'
order_table(object) <- value

## S4 replacement method for signature 'SummarizedPhyloseq'
family_table(object) <- value

## S4 replacement method for signature 'SummarizedPhyloseq'
genus_table(object) <- value

## S4 replacement method for signature 'SummarizedPhyloseq'
species_table(object) <- value

## S4 replacement method for signature 'SummarizedPhyloStats'
kingdom_table(object) <- value

## S4 replacement method for signature 'SummarizedPhyloStats'
phylum_table(object) <- value

## S4 replacement method for signature 'SummarizedPhyloStats'
class_table(object) <- value

## S4 replacement method for signature 'SummarizedPhyloStats'
order_table(object) <- value

## S4 replacement method for signature 'SummarizedPhyloStats'
family_table(object) <- value

## S4 replacement method for signature 'SummarizedPhyloStats'
genus_table(object) <- value

## S4 replacement method for signature 'SummarizedPhyloStats'
species_table(object) <- value

## S4 replacement method for signature 'SummarizedPhyloStats,ANY'
otu_table(x) <- value

Arguments

object	(Required) SummarizedPhyloseq-class or SummarizedPhyloStats-class
value	(Required) otu_table-class

Details

These methods assign an new otu_table-class object to either a SummarizedPhyloseq or a SummarizedPhyloStats object.

See Also

SummarizedPhyloseq-class SummarizedPhyloStats-class summarizeFromPhyloseq

zhuchcn/phylox documentation built on May 31, 2019, 5:14 p.m.