dataFrame2geneSet: dataframe2geneSet
In zhushijia/GIGSEA: Genotype Imputed Gene Set Enrichment Analysis

Description Usage Arguments Value Author(s) See Also

dataframe2geneSet transforms a data frame (1term-1gene) into geneSets (1term-Ngenes).

1	dataframe2geneSet(term, gene, value = NULL)

`term`	a character value incidating the name of the column for the gene set (terms).
`gene`	a character value incidating the name of the column for the genes.
`value`	a vector of numeric values indicating the connectivity of between terms and genes. It could take either discrete values (0 and 1) or continuous values.

a data frame, comprising three vectors: term (like pathway names), geneset (a gene symbol list separate by comma), and value (either discrete or continuous separated by comma)

Shijia Zhu, shijia.zhu@mssm.edu

geneSet2Net; geneSet2sparseMatrix;

zhushijia/GIGSEA documentation built on May 3, 2019, 10:45 p.m.