AdjSpec_AllPoints_curve <- function(diseaseData,
controlData,
userFormula) {
outform <- ParseuserFormula(userFormula = userFormula)
M0 <- eval(parse(text = paste("controlData$",outform[[1]])))
M1 <- eval(parse(text = paste("diseaseData$",outform[[1]])))
if (length(outform[[2]]) == 1) {
expr2 <- paste0("controlData$", outform[[2]])
expr3 <- paste0("diseaseData$", outform[[2]])
} else if (length(outform[[2]]) > 1) {
expr2 <- paste0("controlData[, ", outform[2], "]")
expr3 <- paste0("diseaseData[, ", outform[2], "]")
}
all_Z_C <- eval(parse(text = expr2))
all_Z_D <- eval(parse(text = expr3))
rqfit <- NULL
expr1 <- paste0("rqfit <- rq(", userFormula, ", tau = -1, data = diseaseData)")
eval(parse(text = expr1))
all_tau <- rqfit$sol[1, ]
sens_vec <- 1 - all_tau
est_b <- rqfit$sol[4:(nrow(rqfit$sol)),]
control_threshold_q <- as.matrix(cbind(1, all_Z_C)) %*% est_b
spec_adj <- rep(0, length(all_tau))
spec_adj <- colSums(M0 <= control_threshold_q)/length(M0)
tmpout <- MonoRespect(tau = all_tau, orig_measure = spec_adj, startTau = 0.5)
spec_curve <- tmpout$new_meas
sens_curve <- 1-tmpout$tau
return(list(sensitivity = sens_curve,
specificity = spec_curve,
mono_adj = "ROC"))
}
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