Man pages for zjiang2/haitipkg
R Package for Haiti Article
| agg_mod1_sims | Aggregate Model 1 Simulations |
| agg_mod3_sims | Aggregate Model 3 Simulations |
| ar1_NegBinom | Autoregressive Negative Binomial |
| covars | Make covariate table for Model 1 |
| fit_haiti1 | Fit Haiti 1 |
| fit_haiti2 | Fit Haiti 2 |
| fit_haiti3 | Fit Haiti3 |
| get_elimProbs | Get Elimination Probabilities |
| get_h1_seasonality | Get Haiti 1 Seasonality |
| get_h3_S_quants | Get Susceptible Quantiles for Model 3 |
| get_model3_vacc_scenario_params | Model3 Vaccination Scenario Parameters |
| h1LeeStartsEnd | Lee et al (2020) Model 1 Endemic Parameters |
| h1LeeStartsEpi | Lee et al (2020) Model 1 Epidemic Parameters |
| haiti1 | Build pomp object for Model 1 |
| haiti1_agg_data | Clean haiti cases data for Model 1 |
| haiti1_data | Clean haiti cases data for Model 1 |
| haiti1_dep | Build pomp object for a single department in Model 1 |
| haiti1_disagg | Build pomp object for Model 1 - Disaggregated Joint Model |
| haiti1_joint | Build pomp object for Model 1 - Joint |
| haiti1_panel | Build panelPomp object for Model 1 |
| haiti2 | Build SpatPomp object for Model 2 |
| haiti2_data | Clean haiti cases data for Model 2 |
| haiti2_vaccScenario | Model 2: Project Vaccination Scenario |
| haiti3_dep_data | Function used to get department data for individual... |
| haiti3_spatPomp | Build pomp object for model 3. |
| haitiCholera | Haiti Cholera Data |
| haitiRainfall | Haiti Rainfall Data |
| lee3_spatPomp | Build spatPomp version of model 3 of lee et al (2020). |
| project_from_filter | Project from Filtering Distribution |
| project_rain | Project Rainfall |
| VaccinationScenario3 | Vaccination Scenarios |
| vac_scen | Make covariate table for Model 1 |
| ve_decay | Cholera vaccination efficacy decay by month |
