haiti2: Build SpatPomp object for Model 2

In zjiang2/haitipkg: R Package for Haiti Article

Build SpatPomp object for Model 2

Description

Generate a ‘spatPomp’ object for fitting to Haiti cholera data. Based on the model developed by Laura Matrajt et al. at the University of Florida.

Usage

haiti2(cutoff = 2014.161, region = "before", measure = "linear")

Arguments

cutoff	a numeric. Used to define the cutoff time for the model
region	a character string. Specifies whether the time region is before or after the cutoff time.
measure	a character string. Specifies the measurement model used. Valid entries are "linear" and "log".

Details

Note that VR is v_{rate} in the manuscript. The units were calculated using the fact that VR multiplies the travel matrix Tmat, which has units in km^{-2}.

Value

An object of class ‘spatPomp’.

Examples

c_epidemic <- haiti2(cutoff=2014.25, region="before")

zjiang2/haitipkg documentation built on March 1, 2024, 11:34 p.m.