pct_ept_rich_no_tol: Percentage of EPT Taxa Excluding Tolerant Taxa

In zsmith27/Benthos: Benthos

Description

Percentage of EPT Taxa Excluding Tolerant Taxa

Usage

pct_ept_rich_no_tol(long, rank, master, tolerance_value = "BIBI_TV")

Arguments

long	Taxonomic counts arrange in a long data format (i.e., each row represents a unique sample and taxon).
rank	The taxonomic rank used to perform the analysis. You must sepecify either 'FAMILY' or "GENUS.'
master	A master taxa list including taxonomic ranks Phylum through the specified taxonomic rank (Family or Genus) and the an associated list of tolerance values. The default is set to the master taxa list included in the BIBI package. The master taxa list can be viewed with the following script: master.df <- data(master)
tolerance_value	The name of the column in the master taxon list (specified using the master variable) that contains tolerance values on a scale of 0-10. Tolerant organisms are classified as organisms with a tolerance value >= 7. The defualt is set to the the BIBI tolerance values, which are tolerance values summarized from multiple sources.

Value

Percent of the assembalge represented by Ephemeroptera, Plecoptera, and Trichoptera (EPT) Familial Richness excluding tolerant EPT taxa

zsmith27/Benthos documentation built on May 5, 2019, 2:38 a.m.