abundance | Abundance |
all_metrics | Run All Metrics |
becks | Beck's Index |
benthos_cheat | Benthos Cheat |
blank_col | Temporary vector with zero values |
calc_pct_taxa | The percentage each taxon makes up of a sample |
calc_richness | Internal Use: Calculate Richness |
clean_up | Data Clean Up |
data_prep | Data Prep |
drbc_data_prep | Prepare the DRBC Data |
drbc_master_prep | Prepare the DRBC Attributes Table |
effective_richness | Effective Number of Taxa |
ept_rich_no_tol | EPT Richness Excluding Tolerant Taxa |
fairfax_attributes_prep | Prepare the Fairfax County Taxonomic Attributes Table |
fairfax_data_prep | Prepare the Fairfax County Data |
fill_taxa | Fill empty rows with lowest level of |
gold | Proportion of Gastropoda, Oligochaeta, and Dipteran... |
group_rich | Vector of taxa richness for a specific list of taxa |
group_taxa | Data Frame of a specific list of taxa |
hurlberts_pie | Probability of Interspecific Encounter (PIE) |
long | Long Data Frame Transform taxa count data from wide to a long... |
margalefs | Margalef's Index |
menhinicks | Menhinick's Index |
nysdec_data_prep | Prepare the NYSDEC SBU Data |
nysdec_data_prep_old | Prepare the NYSDEC SBU Data |
nysdec_master_prep | Prepare the NYSDEC Master Taxa List |
ohio_epa_metrics | Ohio Environmental Protection Agency Metrics |
ohio_pct_tolerant | Ohio EPA Percentage of Tolerant Taxa |
pct_acid_tol | Acid Tolerance Index (ATI) |
pct_annelid_chiro | Percentage of Annelid and Chironomid Individuals |
pct_attribute | The percent of a group |
pct_cc_chironomidae | Percentage of Chironomids Identified as Chironomus and... |
pct_cote | Percentage of COTE Individuals |
pct_dom | Percentage of the Most Dominant Taxon (Taxa) |
pct_dom1_group | The percent of the most dominant group |
pct_epmeroptera_no_baetid | Percentage of Ephemeropteran Individuals Minus Baetid |
pct_ept | Percentage of EPT Individuals |
pct_ept_cheumatopsyche | Percent EPT Minus Cheumatopsyche |
pct_ept_hydro_baetid | Percentage of EPT Individuals Minus Hydropsychid and Baetid... |
pct_ept_hydropsyche | Percent EPT minus Hydropsyche |
pct_ept_no_hydro | Percentage of EPT Individuals Minus Hydropsychid Individuals |
pct_ept_rich | EPT Percent Taxa Richness |
pct_ept_rich_no_tol | Percentage of EPT Taxa Excluding Tolerant Taxa |
pct_hydro_ept | Percentage EPT Individuals Identified as Hydropsychids |
pct_hydro_trichoptera | Percentage of Trichopterans Represented by Hydropsychids |
pct_limestone | Percentage of Limestone Individuals |
pct_non_tanytarsini_non_insecta | Percentage of Non-Tanytarsini Diptera and Non-Insecta |
pct_oligo_chiro | Percentage of Oligochaet and Chironomid Individuals |
pct_orthocladiinae | Percentage of Orthocladiinae |
pct_potec | Percentage of POTEC Individuals |
pct_taxon | Percentage of a Specified Taxon |
pct_tol_val | Percentage of Intolerant Individuals |
pct_trichoptera_no_hydro | Percentage of Trichopterans Minus Hydropsychids |
pct_trichoptera_no_tolerant | Percentage of EPT Taxa Excluding Tolerant Taxa |
pct_unidentified | Percentage of Unidentified Individuals |
pct_urban_intol | ***Percentage of Urban Intolerant Individuals*** |
pielou | Pielou's Evenness |
rich_attribute | The richness of a group |
rich_by_rank | Richness of All Taxon |
rich_cote | COTE Richness |
rich_ephem_epeorus | Ephemeropteran Richness minus Epeorus |
rich_ept | EPT Richness |
rich_nco | Non-Chironomid and Oligochaet Taxa Richness |
rich_potec | POTEC Richness |
rich_tolerance | Richness of Tolerance Group |
select_metrics | Run All Metrics |
seq_pct_taxa | The percentage each taxon makes up of a sample |
seq_taxa_rich | Sequence Through and Calculate the Richness of All Taxon |
shannon | Shannon Wiener Diversity Index |
simpsons | Simpson's Diversity Index |
taxon_richness | Taxon Richness |
tol_index | Compute Tolerance Indices |
tol_pres_abs | Tolerance Index for Presence/Absence |
wide | Wide Data Frame Transform taxa count data from long to wide... |
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