order.cytosine: Order clones by cytosine retention

Description Usage Arguments Details Value

View source: R/biqr.R

Description

Order clones by cytosine retention

Usage

1
order.cytosine(ca, context = "hcg", subset.c = TRUE)

Arguments

ca

CloneAlignment

context

"hcg"/"gch"/"cg"

subset.c

whether to subset to cytosine of the specified context, default is TRUE

Details

This function only operates on the base matrix, but it requires the reference be intact (before subsetting).

Value

a CloneAlignment (subset.c=FALSE) or a sorted base matrix (subset.c==TRUE)


zwdzwd/biqr documentation built on May 28, 2017, 2:49 p.m.