order.cytosine: Order clones by cytosine retention
In zwdzwd/biqr: Plot NOMe-seq data
Description
Usage
Arguments
Details
Value
Description
Order clones by cytosine retention
Usage
1
order.cytosine(ca, context = "hcg", subset.c = TRUE)
Arguments
ca
CloneAlignment
context
"hcg"/"gch"/"cg"
subset.c
whether to subset to cytosine of the specified context, default is TRUE
Details
This function only operates on the base matrix, but it requires the reference be intact (before subsetting).
Value
a CloneAlignment (subset.c=FALSE) or a sorted base matrix (subset.c==TRUE)
zwdzwd/biqr documentation built on May 5, 2019, 2:38 a.m.
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Description Usage Arguments Details Value
Description
Order clones by cytosine retention
Usage
1 | order.cytosine(ca, context = "hcg", subset.c = TRUE)
|
Arguments
ca |
CloneAlignment |
context |
"hcg"/"gch"/"cg" |
subset.c |
whether to subset to cytosine of the specified context, default is TRUE |
Details
This function only operates on the base matrix, but it requires the reference be intact (before subsetting).
Value
a CloneAlignment (subset.c=FALSE) or a sorted base matrix (subset.c==TRUE)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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