plotcytosine: Plot cytosine

In zwdzwd/biqr: Plot NOMe-seq data

Description

Plot cytosine

Usage

plotcytosine(m, context = "hcg", add = FALSE, draw = TRUE,
  mar.bottom = 0.05, mar.left = 0.05, mar.top = 0.1, mar.right = 0.05,
  bar.top = 0.05, alpha = 0.9, radius = 3, loc.beg = NULL,
  loc.end = NULL, text.sname.pad = 0.02, show.sname = FALSE)

Arguments

m	CloneAlignment object or base matrix of cytosine alignment
context	either "hcg", "gch" or "cg"
add	superimpose plot without names
draw	whether to draw grobs
mar.bottom	bottom margin
mar.left	left margin
mar.top	top margin
mar.right	right margin
bar.top	height of top bar
alpha	transparency
radius	plot radius
loc.beg	start of plotting range (default to left-most cytosine)
loc.end	end of plotting range (default to right-most cytosine)
text.sname.pad	padding to sample name plot
show.sname	whether to show sample names

zwdzwd/biqr documentation built on May 5, 2019, 2:38 a.m.