biqr-package: Plot NOMe-seq data

In zwdzwd/biqr: Plot NOMe-seq data

Description

create bubble plot of NOMe-seq data

Details

This package implements visualization of NOMeSeq data

Author(s)

Wanding Zhou [e-mail]

Examples

## Not run: 
library(biqr)
setwd('~/tools/biqr')
seq.fns <- paste0('1134071/', list.files('1134071', pattern=".seq"))
seq.fns.3F1R <- seq.fns[grepl("3F1R", seq.fns)]
seq.fns.2F2R <- seq.fns[grepl("2F2R", seq.fns)]
seq.fns.2F2R
seq.fns.3F1R

aln <- localaln(seq.fns.2F2R, "chr8", 11664775, 11667135)
aln <- localaln(seq.fns.3F1R, "chr8", 11664775, 11667135)
plotcytosine(aln$basemat[1:20,], 'hcg')
plotcytosine(aln$basemat[1:20,], 'gch')

## End(Not run)

zwdzwd/biqr documentation built on May 5, 2019, 2:38 a.m.