sesameData_getManifestGRanges: get Infinium manifest GRanges

In zwdzwd/sesameData: Supporting Data for SeSAMe Package

get Infinium manifest GRanges

Description

Note that some unaligned probes are not included. For full manifest, please visit http://zwdzwd.github.io/InfiniumAnnotation

Usage

sesameData_getManifestGRanges(platform, genome = NULL)

Arguments

platform	Mammal40, MM285, EPIC, and HM450
genome	hg38, mm10, ... will infer if not given. For additional mapping, download the GRanges object from http://zwdzwd.github.io/InfiniumAnnotation and provide the following argument ..., genome = sesameAnno_buildManifestGRanges("downloaded_file"),... to this function.

Value

GRanges

Examples

sesameDataCache("Mammal40.address")
res <- sesameData_getManifestGRanges("Mammal40")

zwdzwd/sesameData documentation built on Feb. 27, 2024, 4:37 p.m.