sesameData_getTxnGRanges: convert GRangesList to transcript GRanges
In zwdzwd/sesameData: Supporting Data for SeSAMe Package
sesameData_getTxnGRanges R Documentation
convert GRangesList to transcript GRanges
Description
convert GRangesList to transcript GRanges
Usage
sesameData_getTxnGRanges(genome = NULL, grl = NULL, merge2gene = FALSE)
Arguments
genome
hg38, mm10, ...
grl
GRangesList object
merge2gene
merge transcript to genes
Value
a GRanges object
Examples
## all mm10 transcripts
txns <- sesameData_getTxnGRanges("mm10")
## verified protein-coding transcripts
txns[(txns$transcript_type == "protein_coding" & txns$level <= 2)]
## merged to genes
sesameData_getTxnGRanges("mm10", merge2gene = TRUE)
zwdzwd/sesameData documentation built on Feb. 27, 2024, 4:37 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| sesameData_getTxnGRanges | R Documentation |
convert GRangesList to transcript GRanges
Description
convert GRangesList to transcript GRanges
Usage
sesameData_getTxnGRanges(genome = NULL, grl = NULL, merge2gene = FALSE)
Arguments
genome |
hg38, mm10, ... |
grl |
GRangesList object |
merge2gene |
merge transcript to genes |
Value
a GRanges object
Examples
## all mm10 transcripts
txns <- sesameData_getTxnGRanges("mm10")
## verified protein-coding transcripts
txns[(txns$transcript_type == "protein_coding" & txns$level <= 2)]
## merged to genes
sesameData_getTxnGRanges("mm10", merge2gene = TRUE)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.