bioplex2graph: Representation of BioPlex PPIs in a graph data structure
In ccb-hms/BioPlex: R-side access to BioPlex protein-protein interaction data
bioplex2graph R Documentation
Representation of BioPlex PPIs in a graph data structure
Description
Representation of BioPlex PPIs in a graphNEL object
from the graph package.
Usage
bioplex2graph(bioplex.df)
Arguments
bioplex.df
a data.frame storing the Bioplex PPIs in a flat
from-to format. Typically obtained via getBioPlex.
Value
An object of class graphNEL.
References
BioPlex: https://bioplex.hms.harvard.edu/interactions.php
See Also
getBioPlex, ftM2graphNEL
Examples
# (1) Obtain the latest version of the 293T PPI network
bp.293t <- getBioPlex(cell.line = "293T", version = "3.0")
# (2) Turn the data into a graph
bp.gr <- bioplex2graph(bp.293t)
ccb-hms/BioPlex documentation built on Aug. 5, 2023, 9:15 p.m.
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| bioplex2graph | R Documentation |
Representation of BioPlex PPIs in a graph data structure
Description
Representation of BioPlex PPIs in a graphNEL object
from the graph package.
Usage
bioplex2graph(bioplex.df)
Arguments
bioplex.df |
a |
Value
An object of class graphNEL.
References
BioPlex: https://bioplex.hms.harvard.edu/interactions.php
See Also
getBioPlex, ftM2graphNEL
Examples
# (1) Obtain the latest version of the 293T PPI network
bp.293t <- getBioPlex(cell.line = "293T", version = "3.0")
# (2) Turn the data into a graph
bp.gr <- bioplex2graph(bp.293t)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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