gtex_eqtl: Data frame of cis-eQTLs from GTEx study (version 6p)
In MRCIEU/MRInstruments: Data sources for genetic instruments to be used in MR
Description
Usage
Format
Source
Description
Gene expression - SNP associations from 27094 gene names and 44 tissues. Obtained from http://www.gtexportal.org/home/.
These data only include associations that GTEx labelled as is_choson_snp.
Usage
1
Format
A data frame with 280630 rows and 11 columns
- gene_name
Gene name
- tissue
Tissue
- gene_start
Gene chromosome : gene start position (b37)
- SNP
SNP rs ID
- snp_position
SNP chromosome : SNP position (b37)
- effect_allele
Effect allele
- other_allele
Non effect allele
- beta
Effect size
- se
Standard error
- pval
p-value
- n
samplesize
Source
https://scmv-ieugit.epi.bris.ac.uk/gh13047/gtex_data
MRCIEU/MRInstruments documentation built on June 24, 2020, 9:34 a.m.
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Description Usage Format Source
Description
Gene expression - SNP associations from 27094 gene names and 44 tissues. Obtained from http://www.gtexportal.org/home/.
These data only include associations that GTEx labelled as is_choson_snp.
Usage
1 |
Format
A data frame with 280630 rows and 11 columns
- gene_name
Gene name
- tissue
Tissue
- gene_start
Gene chromosome : gene start position (b37)
- SNP
SNP rs ID
- snp_position
SNP chromosome : SNP position (b37)
- effect_allele
Effect allele
- other_allele
Non effect allele
- beta
Effect size
- se
Standard error
- pval
p-value
- n
samplesize
Source
https://scmv-ieugit.epi.bris.ac.uk/gh13047/gtex_data
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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