population-methods: Manipulate the population factor of genind objects.

In adegenet: Exploratory Analysis of Genetic and Genomic Data

Manipulate the population factor of genind objects.

Description

The following methods allow the user to quickly change the population of a genind object.

Usage

setPop(x, formula = NULL)

setPop(x) <- value

Arguments

x	a genind or genlight object
formula	a nested formula indicating the order of the population strata.
value	same as formula

Author(s)

Zhian N. Kamvar

Examples

data(microbov)

strata(microbov) <- data.frame(other(microbov))

# Currently set on just 
head(pop(microbov)) 

# setting the strata to both Pop and Subpop
setPop(microbov) <- ~coun/breed 
head(pop(microbov))

## Not run: 

# Can be used to create objects as well.
microbov.old <- setPop(microbov, ~spe) 
head(pop(microbov.old))

## End(Not run)

adegenet documentation built on April 4, 2025, 1:15 a.m.