run_caviar: Run CAVIAR.
In variani/finemapr: R wrapper to fine-mappers
Description
Output file ('*_post'):
column #1 is the variant name;
column #2 is the posterior prob. that the variant is causal
(https://github.com/fhormoz/caviar/issues/1#issuecomment-286521771);
column #3 is the amount that this variant contributes to
95
Usage
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run_caviar(
tab,
ld,
dir_run = "run_caviar",
tool = getOption("finemapr_caviar"),
args = ""
)
Examples
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ex <- example_finemap()
out <- run_caviar(ex$tab1, ex$ld1, args = "-c 2")
out <- run_caviar(ex$tab1, ex$ld1, args = "-c 0")
variani/finemapr documentation built on Dec. 12, 2020, 9:40 p.m.
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Description
Output file ('*_post'): column #1 is the variant name; column #2 is the posterior prob. that the variant is causal (https://github.com/fhormoz/caviar/issues/1#issuecomment-286521771); column #3 is the amount that this variant contributes to 95
Usage
1 2 3 4 5 6 7 | run_caviar(
tab,
ld,
dir_run = "run_caviar",
tool = getOption("finemapr_caviar"),
args = ""
)
|
Examples
1 2 3 | ex <- example_finemap()
out <- run_caviar(ex$tab1, ex$ld1, args = "-c 2")
out <- run_caviar(ex$tab1, ex$ld1, args = "-c 0")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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