FinemaprFinemap: S3 class FinemaprFinemap.

In variani/finemapr: R wrapper to fine-mappers

Description

S3 class FinemaprFinemap.

Usage

## S3 method for class 'FinemaprFinemap'
filename_zscore(x, locus = 1)

## S3 method for class 'FinemaprFinemap'
filename_ld(x, locus = 1)

## S3 method for class 'FinemaprFinemap'
filename_snp(x, locus)

## S3 method for class 'FinemaprFinemap'
filename_config(x, locus)

## S3 method for class 'FinemaprFinemap'
filename_k(x, locus)

## S3 method for class 'FinemaprFinemap'
filename_log(x, locus)

## S3 method for class 'FinemaprFinemap'
filename_master(x)

## S3 method for class 'FinemaprFinemap'
write_files(x, ...)

## S3 method for class 'FinemaprFinemap'
run_tool(x, ...)

## S3 method for class 'FinemaprFinemap'
collect_results(x, ...)

print.FinemaprFinemap(x, ...)

## S3 method for class 'FinemaprFinemap'
plot(
  x,
  grid_nrow = NULL,
  grid_ncol = NULL,
  label_size = getOption("finemapr_label_size"),
  label_size_config = label_size,
  label_size_snp = label_size,
  top_rank = getOption("top_rank"),
  top_rank_config = top_rank,
  top_rank_snp = top_rank,
  lim_prob = getOption("lim_prob"),
  lim_prob_config = lim_prob,
  lim_prob_snp = lim_prob,
  lim_prob_ncausal = lim_prob,
  ...
)

## S3 method for class 'FinemaprFinemap'
plot_ncausal(x, locus = 1, lim_prob = c(0, 1), ...)

## S3 method for class 'FinemaprFinemap'
plot_config(
  x,
  locus = 1,
  lim_prob = c(0, 1.5),
  label_size = getOption("finemapr_label_size"),
  top_rank = getOption("top_rank"),
  ...
)

## S3 method for class 'FinemaprFinemap'
plot_snp(
  x,
  locus = 1,
  lim_prob = c(0, 1.5),
  label_size = getOption("finemapr_label_size"),
  top_rank = getOption("top_rank"),
  ...
)

variani/finemapr documentation built on Dec. 12, 2020, 9:40 p.m.