cojo: Run GCTA-COJO.

In variani/finemapr: R wrapper to fine-mappers

Description

http://gcta.freeforums.net/thread/178/conditional-joint-analysis-using-summary

Usage

cojo(
  tab,
  bed,
  method = c("select", "cond"),
  cmd = "",
  snps_cond = NULL,
  dir_run = "run_cojo",
  tool = getOption("finemapr_cojo"),
  args = ""
)

Details

tab <- "~/git/hemostat/scc/results/sumstats-cojo/sumstats-1.cojo" bed <- "~/git/hemostat/scc/data/FineMapping/forGCTA_onco_r1.bed"

variani/finemapr documentation built on Dec. 12, 2020, 9:40 p.m.